Plant GARDEN
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TOP > About the Species(Nicotiana tabacum var. TN90) > genome data >Gene sequences

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SNP Detection
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Data List

All Markers Trait-Related Loci
Nicotiana tabacum

CDS Sequence

CDS ID

lcl|NW_015914507.1_cds_XP_016464494.1_57529
CDS Infomation

[gene=LOC107787438] [db_xref=GeneID:107787438] [protein=aspartyl protease APCB1-like] [protein_id=XP_016464494.1] [location=join(9108..9685,10655..10772,11178..11407,11490..11726,12188..12341,12437..12522,12943..13057,13168..13240,13747..13859)] [gbkey=CDS]
Sequence

ATGGAGGACACAACCAATGACTCTCCTCCTGTAAAAGGGGTAGTAATAATCACACTACCA
CCTCTTGATAATCCTTCTTTAGGCAAAACCATAACTGCATTTACACTCTCTGATTCACCA
CCCCAACACCACCACCAACAACAACAACGAGAACCACCACAACAAAGTCAATCTTCAGTT
CCACAACAAGATTCAAACACTGGCTTTTTTCATGTTTCTTTACAAAGATCGTTCCTTTTT
CGCCCAAGAATCGTTCTTGGACTTTTGGGTATTTCTATAATTGCTTTATCATTCTGGTCT
TCACTTTCACAAGAGACCCTTTTTGAATTAAGAGATGTGGACCGTGATGATCAAAATAGT
TCCAATAGTTCTTTTATTCTTCCTTTGTATCCTAAGCGTGCTAGTATTTGGAATTCAAGG
ACAGATGTTGAGTTTAAACTTGGGAGGTTTGTGGATTTTAAACCTGATATTGTTATGGAG
CTGGTCAATGATCAACAAATGGCTAAGTCTGTGTCTGCTGCTACTAAATTAGACTCTTCT
GCTAATTTTCCTGTCAAGGGTAATATTCATTCGGATGGGTTGTACTACACATATATGCTT
GTGGGGAATCCTCCTAAGCCTTATTTTGTTGATATCGATACGGGAAGTGACTTGATGTGG
ATCCAATGTGATGCTCCATGCACTAGCTGTGCCAAGGGAGCCCACCCATTGTACAAGCCC
AGAAACGTCAATATGATACCTCCAAAAAACCCCTATTGTGTTGAGGTTCAAGAGAATCTC
AGGTCCAAGTATTGTGATAACTGCCATCAATGTGATTATGAGATAGAATACGCTGACCAC
AGCTCTTCTGTTGGGGTTCTTGCAAAAGATACACTTCAATTGGTGCTTGCAAATGGGACA
GGAATCAAGTCAGATGTTGTTTTCGGCTGTGCATATGATCAGCAAGGCACACTTCTCAAC
ACACTAGCAAACACTGATGGGATCCTTGGACTTAGCAGAGCTCCAATCAGTTTACCTTCT
CAGCTAGCAAACCATGGGTTCATCAACAATGTTATTGGACATTGTCTTGGCGCTGATACA
AATGGGGGCTACTTGTTCTTAGGCAATGATTTTGTCCCACATTGGCGGGTGTCATGGGTC
CCTATGCTAAATTCCCCTTTTTCAAATTTTTATCAAGCAGAATTGATGAAAATGAACTAT
GGAAGCAAAGAACTCCAATTAGGCAAAGCGAGAGATGGAAAAGGAACTGTAGTGTTTGAC
AGTGGCAGTACTTACACATATTTCACAAATCAAGCATATAAAGCTTTAATTTCCATGCTT
GAAGAGATTTCCAGTGAAGATCTTATCAAGGATGCATCAGACACGACATTACCCATTTGC
TGGCGAGCTAAATTCCCAGTAAGATCTATTACAGAGGTAAGGCAATTATTCAAACCTCTA
AACCTTCAATTTGGAAGCAAGTGGCGTATAGCGTCCACAAAGCTCTCGATTCCTGCAGAG
GGGTATTTGACTATAAGTGAAAAGGGTAATGTGTGTTTAGGTATCCTTGACGGAAGCAAC
ATTCATGATGGTTCCGGTTTCATACTTGGAGATATTTCACTACGTGGCCAGTTGTTCGTA
TATGACAATGTTAACGAGAAGATTGGATGGATAAGATCAAATTGTGAACGGCCCCAGAAA
CTTTTGAATCTTCCTTTCTTTTGA

Peptide Sequence

PEP ID

XP_016464494.1
PEP Infomation

PREDICTED: aspartyl protease APCB1-like [Nicotiana tabacum]
Sequence

MEDTTNDSPPVKGVVIITLPPLDNPSLGKTITAFTLSDSPPQHHHQQQQREPPQQSQSSV
PQQDSNTGFFHVSLQRSFLFRPRIVLGLLGISIIALSFWSSLSQETLFELRDVDRDDQNS
SNSSFILPLYPKRASIWNSRTDVEFKLGRFVDFKPDIVMELVNDQQMAKSVSAATKLDSS
ANFPVKGNIHSDGLYYTYMLVGNPPKPYFVDIDTGSDLMWIQCDAPCTSCAKGAHPLYKP
RNVNMIPPKNPYCVEVQENLRSKYCDNCHQCDYEIEYADHSSSVGVLAKDTLQLVLANGT
GIKSDVVFGCAYDQQGTLLNTLANTDGILGLSRAPISLPSQLANHGFINNVIGHCLGADT
NGGYLFLGNDFVPHWRVSWVPMLNSPFSNFYQAELMKMNYGSKELQLGKARDGKGTVVFD
SGSTYTYFTNQAYKALISMLEEISSEDLIKDASDTTLPICWRAKFPVRSITEVRQLFKPL
NLQFGSKWRIASTKLSIPAEGYLTISEKGNVCLGILDGSNIHDGSGFILGDISLRGQLFV
YDNVNEKIGWIRSNCERPQKLLNLPFF

Transcript Sequence

Gene sequence data has not been registered.